compiling issue on that openblas recipe ...
NOTE: Executing RunQueue Tasks
ERROR: openblas-0.2.19-r0 do_compile: oe_runmake failed
ERROR: openblas-0.2.19-r0 do_compile: Function failed: do_compile (log file
is located at
../build/tmp/work/cortexa9hf-neon-poky-linux-gnueabi/openblas/0.2.19-r0/temp/log.do_compile.2836)
ERROR: Logfile of failure stored in:
../build/tmp/work/cortexa9hf-neon-poky-linux-gnueabi/openblas/0.2.19-r0/temp/log.do_compile.2836
Log data follows:
| DEBUG: Executing shell function do_compile
| NOTE: make -j 4 HOSTCC=gcc CC=arm-poky-linux-gnueabi-gcc
--sysroot=../build/tmp/sysroots/ ONLY_CBLAS=1 BINARY=32 TARGET=arm
| make[1]: warning: -jN forced in submake: disabling jobserver mode.
| make[1]: Entering directory
'../build/tmp/work/cortexa9hf-neon-poky-linux-gnueabi/openblas/0.2.19-r0/OpenBLAS-0.2.19/interface'
| arm-poky-linux-gnueabi-gcc --sysroot=../build/tmp/sysroots/ -O2 -pipe
-g -feliminate-unused-debug-types
-fdebug-prefix-map=../build/tmp/work/cortexa9hf-neon-poky-linux-gnueabi/openblas/0.2.19-r0=/usr/src/debug/openblas/0.2.19-r0
-fdebug-prefix-map=../build/tmp/sysroots/x86_64-linux=
-fdebug-prefix-map=../build/tmp/sysroots/= -O2 -DMAX_STACK_ALLOC=2048
-Wall -DF_INTERFACE_GFORT -fPIC -DNO_LAPACK -DNO_LAPACKE -DSMP_SERVER
-DNO_WARMUP -DMAX_CPU_NUMBER=4 -DASMNAME= -DASMFNAME=_ -DNAME=_ -DCNAME=
-DCHAR_NAME=\"_\" -DCHAR_CNAME=\"\" -DNO_AFFINITY -I. -O2
-DMAX_STACK_ALLOC=2048 -Wall -DF_INTERFACE_GFORT -fPIC -DNO_LAPACK
-DNO_LAPACKE -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=4
-DASMNAME=cblas_isamax -DASMFNAME=cblas_isamax_ -DNAME=cblas_isamax_
-DCNAME=cblas_isamax -DCHAR_NAME=\"cblas_isamax_\"
-DCHAR_CNAME=\"cblas_isamax\" -DNO_AFFINITY -I.. -I. -UDOUBLE -UCOMPLEX
-DCBLAS -c -DUSE_ABS -UUSE_MIN imax.c -o cblas_isamax.o
| arm-poky-linux-gnueabi-gcc --sysroot=../build/tmp/sysroots/ -O2 -pipe
-g -feliminate-unused-debug-types
-fdebug-prefix-map=../build/tmp/work/cortexa9hf-neon-poky-linux-gnueabi/openblas/0.2.19-r0=/usr/src/debug/openblas/0.2.19-r0
-fdebug-prefix-map=../build/tmp/sysroots/x86_64-linux=
-fdebug-prefix-map=../build/tmp/sysroots/= -O2 -DMAX_STACK_ALLOC=2048
-Wall -DF_INTERFACE_GFORT -fPIC -DNO_LAPACK -DNO_LAPACKE -DSMP_SERVER
-DNO_WARMUP -DMAX_CPU_NUMBER=4 -DASMNAME= -DASMFNAME=_ -DNAME=_ -DCNAME=
-DCHAR_NAME=\"_\" -DCHAR_CNAME=\"\" -DNO_AFFINITY -I. -O2
-DMAX_STACK_ALLOC=2048 -Wall -DF_INTERFACE_GFORT -fPIC -DNO_LAPACK
-DNO_LAPACKE -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=4
-DASMNAME=cblas_sasum -DASMFNAME=cblas_sasum_ -DNAME=cblas_sasum_
-DCNAME=cblas_sasum -DCHAR_NAME=\"cblas_sasum_\"
-DCHAR_CNAME=\"cblas_sasum\" -DNO_AFFINITY -I.. -I. -UDOUBLE -UCOMPLEX
-DCBLAS -c asum.c -o cblas_sasum.o
| arm-poky-linux-gnueabi-gcc --sysroot=../build/tmp/sysroots/ -O2 -pipe
-g -feliminate-unused-debug-types
-fdebug-prefix-map=../build/tmp/work/cortexa9hf-neon-poky-linux-gnueabi/openblas/0.2.19-r0=/usr/src/debug/openblas/0.2.19-r0
-fdebug-prefix-map=../build/tmp/sysroots/x86_64-linux=
-fdebug-prefix-map=../build/tmp/sysroots/= -O2 -DMAX_STACK_ALLOC=2048
-Wall -DF_INTERFACE_GFORT -fPIC -DNO_LAPACK -DNO_LAPACKE -DSMP_SERVER
-DNO_WARMUP -DMAX_CPU_NUMBER=4 -DASMNAME= -DASMFNAME=_ -DNAME=_ -DCNAME=
-DCHAR_NAME=\"_\" -DCHAR_CNAME=\"\" -DNO_AFFINITY -I. -O2
-DMAX_STACK_ALLOC=2048 -Wall -DF_INTERFACE_GFORT -fPIC -DNO_LAPACK
-DNO_LAPACKE -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=4
-DASMNAME=cblas_saxpy -DASMFNAME=cblas_saxpy_ -DNAME=cblas_saxpy_
-DCNAME=cblas_saxpy -DCHAR_NAME=\"cblas_saxpy_\"
-DCHAR_CNAME=\"cblas_saxpy\" -DNO_AFFINITY -I.. -I. -UDOUBLE -UCOMPLEX
-DCBLAS -c axpy.c -o cblas_saxpy.o
| arm-poky-linux-gnueabi-gcc --sysroot=../build/tmp/sysroots/ -O2 -pipe
-g -feliminate-unused-debug-types
-fdebug-prefix-map=../build/tmp/work/cortexa9hf-neon-poky-linux-gnueabi/openblas/0.2.19-r0=/usr/src/debug/openblas/0.2.19-r0
-fdebug-prefix-map=../build/tmp/sysroots/x86_64-linux=
-fdebug-prefix-map=../build/tmp/sysroots/= -O2 -DMAX_STACK_ALLOC=2048
-Wall -DF_INTERFACE_GFORT -fPIC -DNO_LAPACK -DNO_LAPACKE -DSMP_SERVER
-DNO_WARMUP -DMAX_CPU_NUMBER=4 -DASMNAME= -DASMFNAME=_ -DNAME=_ -DCNAME=
-DCHAR_NAME=\"_\" -DCHAR_CNAME=\"\" -DNO_AFFINITY -I. -O2
-DMAX_STACK_ALLOC=2048 -Wall -DF_INTERFACE_GFORT -fPIC -DNO_LAPACK
-DNO_LAPACKE -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=4
-DASMNAME=cblas_scopy -DASMFNAME=cblas_scopy_ -DNAME=cblas_scopy_
-DCNAME=cblas_scopy -DCHAR_NAME=\"cblas_scopy_\"
-DCHAR_CNAME=\"cblas_scopy\" -DNO_AFFINITY -I.. -I. -UDOUBLE -UCOMPLEX
-DCBLAS -c copy.c -o cblas_scopy.o
| <command-line>:0:0: warning: "ASMNAME" redefined
| <command-line>:0:0: warning: "ASMNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "ASMFNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "NAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CHAR_NAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CHAR_CNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "ASMNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "ASMFNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "NAME" redefined
| In file included from ../build/tmp/sysroots//usr/include/features.h:392:0,
| from ../build/tmp/sysroots//usr/include/stdio.h:27,
| from imax.c:39:
| ../build/tmp/sysroots//usr/include/gnu/stubs.h:7:29: fatal error:
gnu/stubs-soft.h: No such file or directory
| # include <gnu/stubs-soft.h>
| ^
| compilation terminated.
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CHAR_NAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CHAR_CNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "ASMFNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "NAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CHAR_NAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CHAR_CNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "ASMNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "ASMFNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "NAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CHAR_NAME" redefined
| In file included from ../build/tmp/sysroots//usr/include/features.h:392:0,
| from ../build/tmp/sysroots//usr/include/stdio.h:27,
| from axpy.c:39:
| ../build/tmp/sysroots//usr/include/gnu/stubs.h:7:29: fatal error:
gnu/stubs-soft.h: No such file or directory
| # include <gnu/stubs-soft.h>
| ^
| <command-line>:0:0: note: this is the location of the previous definition
| <command-line>:0:0: warning: "CHAR_CNAME" redefined
| <command-line>:0:0: note: this is the location of the previous definition
| ERROR: oe_runmake failed
| In file included from ../build/tmp/sysroots//usr/include/features.h:392:0,
| from ../build/tmp/sysroots//usr/include/stdio.h:27,
| from asum.c:39:
| ../build/tmp/sysroots//usr/include/gnu/stubs.h:7:29: fatal error:
gnu/stubs-soft.h: No such file or directory
| # include <gnu/stubs-soft.h>
| ^
| compilation terminated.
| In file included from ../build/tmp/sysroots//usr/include/features.h:392:0,
| from ../build/tmp/sysroots//usr/include/stdio.h:27,
| from copy.c:39:
| ../build/tmp/sysroots//usr/include/gnu/stubs.h:7:29: fatal error:
gnu/stubs-soft.h: No such file or directory
| # include <gnu/stubs-soft.h>
| ^
| compilation terminated.
| compilation terminated.
| Makefile:1351: recipe for target 'cblas_isamax.o' failed
| make[1]: *** [cblas_isamax.o] Error 1
| make[1]: *** Waiting for unfinished jobs....
| Makefile:1375: recipe for target 'cblas_sasum.o' failed
| make[1]: *** [cblas_sasum.o] Error 1
| Makefile:1447: recipe for target 'cblas_scopy.o' failed
| make[1]: *** [cblas_scopy.o] Error 1
| Makefile:1435: recipe for target 'cblas_saxpy.o' failed
| make[1]: *** [cblas_saxpy.o] Error 1
| make[1]: Leaving directory
'../build/tmp/work/cortexa9hf-neon-poky-linux-gnueabi/openblas/0.2.19-r0/OpenBLAS-0.2.19/interface'
| Makefile:133: recipe for target 'libs' failed
| make: *** [libs] Error 1
| ERROR: Function failed: do_compile (log file is located at
../build/tmp/work/cortexa9hf-neon-poky-linux-gnueabi/openblas/0.2.19-r0/temp/log.do_compile.2836)
ERROR: Task
(../sources/meta-fsl-bsp-release/imx/meta-bsp/recipes-graphics/openblas/openblas_0.2.19.bb:do_compile)
failed with exit code '1'
NOTE: Tasks Summary: Attempted 433 tasks of which 432 didn't need to be
rerun and 1 failed.
Post by Giordon StarkOpenBLAS is here: http://layers.openembedded.org/layerindex/recipe/68888/
G
Post by Philip BalisterYou'll get to Atlas soon, and that is another source of pain :)
Philip
Post by Peter BalazovicSeems OpenBLAS is missing, is there recipe for it?
ERROR: scipy-1.0.0-r0 do_compile: python setup.py build execution
failed.
Post by Peter BalazovicERROR: scipy-1.0.0-r0 do_compile: Function failed: do_compile (log file
is
Post by Peter Balazoviclocated at /log.do_compile.8708)
ERROR: Logfile of failure stored in: /1.0.0-r0/temp/log.do_compile.8708
| DEBUG: Executing shell function do_compile
| ERROR: python setup.py build execution failed.
| /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown
distribution option: 'python_requires'
| warnings.warn(msg)
| libraries openblas not found in ['/usr/lib']
| NOT AVAILABLE
|
| libraries mkl,vml,guide not found in ['/usr/lib']
| NOT AVAILABLE
|
| NOT AVAILABLE
|
| Setting PTATLAS=ATLAS
| libraries tatlas,tatlas not found in /usr/lib
| libraries lapack_atlas not found in /usr/lib
| <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
| NOT AVAILABLE
|
| libraries satlas,satlas not found in /usr/lib
| libraries lapack_atlas not found in /usr/lib
| <class 'numpy.distutils.system_info.atlas_3_10_info'>
| NOT AVAILABLE
|
| Setting PTATLAS=ATLAS
| libraries ptf77blas,ptcblas,atlas not found in /usr/lib
| libraries lapack_atlas not found in /usr/lib
| <class 'numpy.distutils.system_info.atlas_threads_info'>
| NOT AVAILABLE
|
| libraries f77blas,cblas,atlas not found in /usr/lib
| libraries lapack_atlas not found in /usr/lib
| <class 'numpy.distutils.system_info.atlas_info'>
| NOT AVAILABLE
|
| /usr/lib/python2.7/site-packages/numpy/distutils/
| Atlas (http://math-atlas.sourceforge.net/) libraries not found.
| Directories to search for the libraries can be specified in the
| numpy/distutils/site.cfg file (section [atlas]) or by setting
| the ATLAS environment variable.
| warnings.warn(AtlasNotFoundError.__doc__)
| libraries lapack not found in ['/usr/lib']
| NOT AVAILABLE
|
| Lapack (http://www.netlib.org/lapack/) libraries not found.
| Directories to search for the libraries can be specified in the
| numpy/distutils/site.cfg file (section [lapack]) or by setting
| the LAPACK environment variable.
| warnings.warn(LapackNotFoundError.__doc__)
| NOT AVAILABLE
|
| Lapack (http://www.netlib.org/lapack/) sources not found.
| Directories to search for the sources can be specified in the
| numpy/distutils/site.cfg file (section [lapack_src]) or by setting
| the LAPACK_SRC environment variable.
| warnings.warn(LapackSrcNotFoundError.__doc__)
| NOT AVAILABLE
|
| Running from scipy source directory.
| File "setup.py", line 418, in <module>
| setup_package()
| File "setup.py", line 414, in setup_package
| setup(**metadata)
| File "/usr/lib/python2.7/site-packages/numpy/distutils/core.py",
line
Post by Peter Balazovic135, in setup
| config = configuration()
| File "setup.py", line 336, in configuration
| config.add_subpackage('scipy')
| File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_
util.py",
Post by Peter Balazovicline 1003, in add_subpackage
| caller_level = 2)
| File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_
util.py",
Post by Peter Balazovicline 972, in get_subpackage
| caller_level = caller_level + 1)
| File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_
util.py",
Post by Peter Balazovicline 909, in _get_configuration_from_setup_py
| config = setup_module.configuration(*args)
| File "scipy/setup.py", line 15, in configuration
| config.add_subpackage('linalg')
| File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_
util.py",
Post by Peter Balazovicline 1003, in add_subpackage
| caller_level = 2)
| File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_
util.py",
Post by Peter Balazovicline 972, in get_subpackage
| caller_level = caller_level + 1)
| File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_
util.py",
Post by Peter Balazovicline 909, in _get_configuration_from_setup_py
| config = setup_module.configuration(*args)
| File "scipy/linalg/setup.py", line 19, in configuration
| raise NotFoundError('no lapack/blas resources found')
| numpy.distutils.system_info.NotFoundError: no lapack/blas resources
found
Post by Peter Balazovic| ERROR: Function failed: do_compile (log file is located at
/scipy/1.0.0-r0/temp/log.do_compile.8708)
ERROR: Task
(/sources/meta-openembedded/meta-python/recipes-devtools/
python/scipy_1.0.0.bb:do_compile)
Post by Peter Balazovicfailed with exit code '1'
NOTE: Tasks Summary: Attempted 8394 tasks of which 8382 didn't need to
be
Post by Peter Balazovicrerun and 1 failed.
Post by Burton, RossTo change the version, change the filename of the recipe.
Also, please remember the CC the list.
Ross
I did download from https://github.com/scipy/
scipy/archive/v1.0.0.tar.gz
Post by Peter BalazovicPost by Burton, Rossand cc to /downloads and same still issue ...
as mentioned should be version is 1.0.0
where to change it to point to correct version & file?
Post by Burton, RossYou're getting a "file not found" for the URL it is looking for.
According to https://pypi.python.org/pypi/scipy, the version is
1.0.0
Post by Peter BalazovicPost by Burton, RossPost by Burton, Rossnot 1.0.
Ross
On 16 March 2018 at 16:50, Peter Balazovic <
Post by Peter Balazovicper using recipe https://github.com/scipy/scipy/issues/8226
SUMMARY = "Scientific Library for Python"
SECTION = "devel/python"
HOMEPAGE = "https://pypi.python.org/pypi/scipy"
LICENSE = "BSD-3-Clause"
LIC_FILES_CHKSUM = "file://LICENSE.txt;md5=
d0db8f4148a3d5534cfb93be78f9287c"
Post by Peter BalazovicPost by Burton, RossPost by Burton, RossPost by Peter BalazovicPYPI_PACKAGE="scipy"
SRC_URI[md5sum] = "53fa34bd3733a9a4216842b6000f7316"
SRC_URI[sha256sum] = "87ea1f11a0e9ec08c264dc64551d50
1fa307289460705f6fccd84cbfc7926d10"
Post by Peter BalazovicPost by Burton, RossPost by Burton, RossPost by Peter Balazovicinherit pypi setuptools distutils
RDEPENDS_${PN} += "python-core python-numpy-native python-distutils"
DEPENDS += "python-numpy"
I am getting error to fetch scipy do_fetch error
WARNING: scipy-1.0-r0 do_fetch: Failed to fetch URL
https://files.pythonhosted.org/packages/source/s/scipy/
scipy-1.0.tar.gz,
Post by Peter BalazovicPost by Burton, RossPost by Burton, RossPost by Peter Balazovicattempting MIRRORS if available
ERROR: scipy-1.0-r0 do_fetch: Fetcher failure: Fetch command export
DBUS_SESSION_BUS_ADDRESS="unix:abstract=/tmp/dbus-idNNJsmT3C";
export
Post by Peter BalazovicPost by Burton, RossPost by Burton, RossPost by Peter BalazovicSSH_AUTH_SOCK="/run/user/1000/keyring/ssh"; export ftp_proxy=
--2018-03-16 17:43:34-- https://files.pythonhosted.org
/packages/source/s/scipy/scipy-1.0.tar.gz
Resolving files.pythonhosted.org (files.pythonhosted.org)...
151.101.17.63, 2a04:4e42:4::319
Connecting to files.pythonhosted.org (files.pythonhosted.org)|151.
101.17.63|:443...
Post by Peter BalazovicPost by Burton, RossPost by Burton, RossPost by Peter Balazovicconnected.
HTTP request sent, awaiting response... 404 Not Found
2018-03-16 17:43:35 ERROR 404: Not Found.
Any help?
On Thu, Mar 15, 2018 at 9:35 PM, Randy MacLeod <
Post by Randy MacLeodPost by Peter BalazovicHello all,
I wonder if there is scipy recipe available?
https://layers.openembedded.org/layerindex/branch/master/rec
ipes/?q=scipy
https://github.com/scipy/scipy/issues/8226
but apparently that's a bitbake issue, not a spip one.
Care to take a look?
--
# Randy MacLeod. WR Linux
# Wind River an Intel Company
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Giordon Stark